HsaEX0069757 @ hg19
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059]
Coordinates
chr1:78191307-78194397:-
Coord C1 exon
chr1:78193980-78194397
Coord A exon
chr1:78192206-78192323
Coord C2 exon
chr1:78191307-78191447
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCCTGAAACAGGGT
3' ss Score
9.03
5' ss Seq
CAGGTGTAC
5' ss Score
2.59
Exon sequences
Seq C1 exon
GATGCTCAAGAATTCCTTCGATGTTTAATGGATTTGCTTCATGAAGAATTGAAAGAGCAAGTCATGGAAGTAGAAGAAGATCCGCAAACCATAACCACTGAGGAGACAATGGAAGAAGACAAGAGCCAGTCGGATGTAGATTTTCAGTCTTGTGAATCTTGTAGCAACAGTGATAGAGCAGAAAATGAAAATGGCTCTAGATGCTTTTCTGAAGATAATAATGAAACAACAATGTTAATTCAGGATGATGAAAACAATTCAGAAATGTCAAAGGATTGGCAAAAAGAGAAGATGTGCAATAAGATTAATAAAGTAAATTCTGAAGGCGAATTTGATAAAGATAGAGACTCTATATCTGAAACAGTCGACTTAAACAACCAGGAAACTGTCAAAGTGCAAATACACAGCAGAGCTTCAG
Seq A exon
GGTCTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCACATCTCACCACAGCCTCAACCTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCTTGAGTAGCCAGCACTACAG
Seq C2 exon
AATATATCACTGATGTCCATTCGAATGACCTGTCTACACCACAGATCCTTCCATCAAATGAAGGTGTTAATCCACGTTTATCGGCAAGCCCTCCTAAATCAGGCAATTTGTGGCCAGGATTGGCACCACCACACAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254-'13-17,'13-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=1.000 C2=0.801
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(54.2=74.3)
A:
PF139001=GVQW=WD(100=81.5)
C2:
PF0044324=UCH=PU(8.2=48.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAAAAGAGAAGATGTGCA
R:
CTGATTTAGGAGGGCTTGCCG
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)