HsaEX0070270 @ hg38
Exon Skipping
Gene
ENSG00000134215 | VAV3
Description
vav guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr1:107777231-107779492:-
Coord C1 exon
chr1:107779434-107779492
Coord A exon
chr1:107777670-107777770
Coord C2 exon
chr1:107777231-107777296
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTGTCTTCTACTAGTTT
3' ss Score
8.08
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAG
Seq A exon
TTTTCATCTACACTAGTGAACGGAGCCATGGAAGGATGATTGCTACCAAATTATTTGTTATCAGATCCCACAGCTGAAAAGAGAGGGTGCTGAAGGCAAGG
Seq C2 exon
GCCCTTCCCAACAGAAGAAAGCATTAATGATGAAGACATCTACAAAGGCCTTCCTGATTTAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134215_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACATTATCACGACTTTCTCGA
R:
AAATCAGGAAGGCCTTTGTAGATGT
Band lengths:
114-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development