HsaEX0070343 @ hg19
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38032217-38035223:+
Coord C1 exon
chr3:38032217-38032320
Coord A exon
chr3:38032625-38032663
Coord C2 exon
chr3:38035078-38035223
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCCCCTCACTCTAGAGG
3' ss Score
8.95
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AGTTACAGTGGTGGGGACCAGGAGTAGGGAGGCAGAGACTGGCCCCGTGCCAGGCCTAGCACTGCCCACAGGCAGGGCGAAGGCGCGGGAGCAGTTTCCAGCAG
Seq A exon
AGGGCGGCACCACTCCCTGCTCCATGGAAACTGAGCAAG
Seq C2 exon
TTGTACAGGTAGCCAGGTGTCGGTCTCCAGCCTGAGAACTCTGGCTGTTGTTCCTTGTGTCGTCCCATATTCCTGCCTGGCCTGCGATGGACATCAGCAAGGGCCTCCCAGGCATGCAGGGAGGCCTCCACATATGGATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'1-3,'1-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAGGGAGGCAGAGACTGG
R:
AGAGTTCTCAGGCTGGAGACC
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)