HsaEX0070343 @ hg38
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37990726-37993146:+
Coord C1 exon
chr3:37990726-37990829
Coord A exon
chr3:37991134-37991172
Coord C2 exon
chr3:37993046-37993146
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCCCCTCACTCTAGAGG
3' ss Score
8.95
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AGTTACAGTGGTGGGGACCAGGAGTAGGGAGGCAGAGACTGGCCCCGTGCCAGGCCTAGCACTGCCCACAGGCAGGGCGAAGGCGCGGGAGCAGTTTCCAGCAG
Seq A exon
AGGGCGGCACCACTCCCTGCTCCATGGAAACTGAGCAAG
Seq C2 exon
GTTTCTGAAGGAGTGGTGCAGGGAAGCCTCAGGTAATTGAATATGAAGTGCCAAGACATAACAAAATCGACAGAAGTGAGGGTCCCTTCCTTCCCCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-'1-4,'1-3,2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAGGGAGGCAGAGACTGG
R:
ATTACCTGAGGCTTCCCTGCA
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development