HsaEX1043489 @ hg38
Exon Skipping
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37988059-37993732:+
Coord C1 exon
chr3:37988059-37988238
Coord A exon
chr3:37993046-37993144
Coord C2 exon
chr3:37993587-37993732
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGACCAAACCTCACACACAGGTT
3' ss Score
3.57
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GAGGGCGGGAAGGGCCCTCTGTGGGGCTGCCATTTTGGCTGGGACCTAAATGCAGTAAAGGAGCAGCTACGGGAATATAGAGAGTGGGGCTTCCAGGCAGAGAAGCCTGCAGTGCAAAGGTCTGCAGACAACGACCTGGGCGTCTTCAAGGGACACAAGGAATCATATTGCCAGAACACA
Seq A exon
GTTTCTGAAGGAGTGGTGCAGGGAAGCCTCAGGTAATTGAATATGAAGTGCCAAGACATAACAAAATCGACAGAAGTGAGGGTCCCTTCCTTCCCCCAG
Seq C2 exon
TTGTACAGGTAGCCAGGTGTCGGTCTCCAGCCTGAGAACTCTGGCTGTTGTTCCTTGTGTCGTCCCATATTCCTGCCTGGCCTGCGATGGACATCAGCAAGGGCCTCCCAGGCATGCAGGGAGGCCTCCACATATGGATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAAAGGAGCAGCTACGG
R:
AGAGTTCTCAGGCTGGAGACC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains