HsaEX0070382 @ hg19
Exon Skipping
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:12697]
Coordinates
chr2:37000934-37010545:+
Coord C1 exon
chr2:37000934-37000990
Coord A exon
chr2:37002145-37002210
Coord C2 exon
chr2:37010483-37010545
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTGTAATCCCCTCAGGTA
3' ss Score
9.77
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATCTCTGGTCCACTGCCACCTACACAAGCAGCCAAAACAGGCCCAGAGCTGATCCAG
Seq A exon
GTATCCAAAGGCAAGATCCTTCAGGAGCTGCCTTCCAGAAACCTGTTGGAGCGGATGTCAGCCTGG
Seq C2 exon
GACTTGTTCCAAAAGAAGAATTGAGCACACAGTCTTTGGAGCCAGTATCCCTGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.885 A=0.692 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACTGCCACCTACACAAG
R:
CAGGGATACTGGCTCCAAAGAC
Band lengths:
103-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)