HsaEX0070383 @ hg19
Exon Skipping
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:12697]
Coordinates
chr2:37002145-37010545:+
Coord C1 exon
chr2:37002145-37002210
Coord A exon
chr2:37008870-37008914
Coord C2 exon
chr2:37010483-37010545
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCAATTTTGAAAATCAGGAG
3' ss Score
4.4
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTATCCAAAGGCAAGATCCTTCAGGAGCTGCCTTCCAGAAACCTGTTGGAGCGGATGTCAGCCTGG
Seq A exon
GAGAGATGGACTCATGGAAACCTGGATCGGTCCTTTTAGATGAAG
Seq C2 exon
GACTTGTTCCAAAAGAAGAATTGAGCACACAGTCTTTGGAGCCAGTATCCCTGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.692 A=0.406 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGGCAAGATCCTTCAGG
R:
CAGGGATACTGGCTCCAAAGAC
Band lengths:
116-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)