GgaEX0015778 @ galGal4
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
vitrin precursor [Source:RefSeq peptide;Acc:NP_001019751]
Coordinates
chr3:31504313-31510243:-
Coord C1 exon
chr3:31510181-31510243
Coord A exon
chr3:31507176-31507223
Coord C2 exon
chr3:31504313-31504375
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCATGTATGAAAGCAA
3' ss Score
4.09
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATTCAGCGCCAAGAGCCCGTCGCCACCTTCCGTAGGCCTGCCGGGTCTCCAGCCCATCTGG
Seq A exon
CAATAGAAACAGACTTGTGGAAACCTGGACTGAGCTTTTTTGACACAG
Seq C2 exon
GTTTTGCTTCAAAGGAGGAACTGAACCTGAAGCCACTGGAGGCGACCTCCCAGGGGAACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.059 C2=0.364
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(6.4=100)
A:
PF115933=Med3=FE(4.8=100)
C2:
PF115933=Med3=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCAGCGCCAAGAGCCC
R:
GGGTTCCCCTGGGAGGTC
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]