MmuEX6079435 @ mm10
Exon Skipping
Gene
ENSMUSG00000024076 | Vit
Description
vitrin [Source:MGI Symbol;Acc:MGI:1921449]
Coordinates
chr17:78586658-78601906:+
Coord C1 exon
chr17:78586658-78586843
Coord A exon
chr17:78599824-78599868
Coord C2 exon
chr17:78601844-78601906
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTATTGAAATTCAGAAG
3' ss Score
4.67
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTATTCCAGGGACAACCATACAGCCTGTCACCCTGACACAGGCTCAAGCTACCCCTGTAGCTGAGGTCACCCACAGATCCACCTCAAAGCCATTTGCAGCATCTGTCACCAACAGCCCCAGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
Seq A exon
AAGAGGTGGACGGGTGGAAGCCTGGACCAGTCCTTTTAGATTCAG
Seq C2 exon
GATTTGTGCCAAAAGAAGAACTCAGCACACAGTCTTCGGAGCCAGTGCCGCAGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024076-'14-19,'14-17,18-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.562 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCCTGTAGCTGAGGTCAC
R:
CTCCGAAGACTGTGTGCTGAG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types