GgaEX0015778 @ galGal3
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
NA
Coordinates
chr3:33401135-33407065:-
Coord C1 exon
chr3:33407003-33407065
Coord A exon
chr3:33403998-33404045
Coord C2 exon
chr3:33401135-33401197
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCATGTATGAAAGCAA
3' ss Score
4.09
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTATTCAGCGCCAAGAGCCCGTCGCCACCTTCCGTAGGCCTGCCGGGTCTCCAGCCCATCTGG
Seq A exon
CAATAGAAACAGACTTGTGGAAACCTGGACTGAGCTTTTTTGACACAG
Seq C2 exon
GTTTTGCTTCAAAGGAGGAACTGAACCTGAAGCCACTGGAGGCGACCTCCCAGGGGAACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.118 C2=0.364
Domain overlap (PFAM):
C1:
PF115933=Med3=FE(7.2=100)
A:
PF115933=Med3=FE(5.5=100)
C2:
PF115933=Med3=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCAGCGCCAAGAGCCC
R:
GGGTTCCCCTGGGAGGTC
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]