RnoEX0098041 @ rn6
Exon Skipping
Gene
ENSRNOG00000004706 | Vit
Description
vitrin [Source:RGD Symbol;Acc:1564128]
Coordinates
chr6:1165856-1180882:+
Coord C1 exon
chr6:1165856-1166041
Coord A exon
chr6:1179118-1179162
Coord C2 exon
chr6:1180820-1180882
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATTAAAATTCAGAAG
3' ss Score
5.12
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTCTTCCAGGGACAACCGCACAGCCTGTCACCCTGTCACAGGCTCTAGCTACCCCAGTAGCTGAAGCTACCCACAGAGCCACCTCAAAGCCATTTGCAGCATCTGTCACAAGCAGCTCCCGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
Seq A exon
AAGAGATGGCGACATGGAAGCCTGAACCAGTCCTTTTAGATTCAG
Seq C2 exon
GATTTGTGCCAAAAGAAGAACTCAGCACACAGTCTTCGGAGCCAGTGTTGCAGGGAGACCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004706_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=0.562 C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCACAGAGCCACCTCAAA
R:
CAACACTGGCTCCGAAGACTG
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]