BtaEX0039637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024980 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
Coordinates
chr11:19252833-19269789:+
Coord C1 exon
chr11:19252833-19253024
Coord A exon
chr11:19268192-19268236
Coord C2 exon
chr11:19269727-19269789
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATCCTGAAAATCAGGGG
3' ss Score
3.18
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGGAGACAGCAAGAGCAGATCAGAGCCCACCAGTTCCAGGGACAGCAGCACAGCCGGTCACTGTGACACAGGCGCCGGGGACCACTGCCATTGAGGCCACCCACACCACCTTGCCAAAGCCCTCCCCATCTGCAGGCTCCACCGCCAGCGGCCTCCGACCACAGCCCGCGGGCCAGAGAAGCAAGGACCTGG
Seq A exon
GGGAACCTGCCTTGTGGAAACCTGAATCAGTCCTTCTCGATGCAG
Seq C2 exon
GATTTGTTCCAAAAGAAGAATTAAGCACACAGTCTTTGGAGCCAGCATCCCAGGGAGATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024980-'7-10,'7-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.375 C2=0.773
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACCACCTTGCCAAAG
R:
GGCTCCAAAGACTGTGTGCTT
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development