HsaEX0070393 @ hg19
Exon Skipping
Gene
ENSG00000213777 | VN1R103P
Description
NA
Coordinates
chr19:54006444-54015402:+
Coord C1 exon
chr19:54006444-54007350
Coord A exon
chr19:54008281-54008364
Coord C2 exon
chr19:54015217-54015402
Length
84 bp
Sequences
Splice sites
3' ss Seq
GCTCATTCTCCTCCTGGCAGGAG
3' ss Score
8.18
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
TTTGGGTTTAGGCATTTCCGGAGTGATTCTGGATGTAAATTTCTTTTTTGTGTCCACAGAGTTGTCAGGGGAGTGTCCATTGGCAGCACCTGCCTCCTGAGTGTCTCCCAGGCCATCACCATCAGCCCCAGGAGCTCAGGTGGGCAGAGCTTAAAGGGAACGCCCCCAAGCACGCTGGCTCCTGTGTGTTCCTCAGCTGGCTCCTCCCTGGTCAATATCATTGTTCTCATGCACGTGACCGGCAAGTGGAGCAACAAAAATACCACAAAGACAAAAGATCTGGGATACTGTTCTGCTGCTGATCACGAGGACACCAGAGAGTCGCTGACGCGGCACTGCTGTCCTTCCCTGATGTGATCTGCCTGGGGCTCATGCTCTGGGGCAGCAGCTCCATCGTTTGCATCCTGCACAGGCACAAGCGGCGGGTCCAGCACATTCATAGGACCAGCGTCTCCCCCACATCCTCCCCTGAGTCCGGAGCTACCAAAACCATCCTCCTG
Seq A exon
GAGCAGGAAAGGACGAAGAGTCCCCGAAGCTGATGCTGAGTTCATGGGGTTGAGCTGACAGCGGCCAACAGGCTGTCATAAACT
Seq C2 exon
GTTCTAGCATGTATTAACACCGTGTGTCTAAAGTCATCCCTGCTGGTCATCTGGAGGAATCTGAGAAGGGGCAGGTCTTTCTTCTGACTCTCAGAGCAGCACCCTCTGCTGGACAGGGCTGGGCACCTCATCTCAAGCCCAATCTGATCCACCAACAGGGTCTGTTATCTCCGGTCCGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213777_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCATCGTTTGCATCCTG
R:
CTCCAGATGACCAGCAGGGAT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)