HsaEX0070393 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:53423156-53512148:+
Coord C1 exon
chr19:53423156-53423502
Coord A exon
chr19:53505027-53505567
Coord C2 exon
chr19:53511963-53512148
Length
541 bp
Sequences
Splice sites
3' ss Seq
GCTCATTCTCCTCCTGGCAGGAG
3' ss Score
8.18
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
AAGGGAACGCCCCCAAGCACGCTGGCTCCTGTGTGTTCCTCAGCTGGCTCCTCCCTGGTCAATATCATTGTTCTCATGCACGTGACCGGCAAGTGGAGCAACAAAAATACCACGAAGACAAAAGATCTGGGATACTGTTCTGCTGCTGATCACGAGGGCACCAGAGAGTCGCTGACGCGGCACTGCTGTCCTTCCCTGATGTGATCTGCCTGGGGCTCATGCTCTGGGGCAGCAGCTCCATCGTTTGCATCCTGCACAGGCACAAGCGGCGGGTCCAGCACATTCATAGGACCAGCGTGTCCCCCACATCCTCCCCTGAGTCCGGAGCTACCAAAACCATCCTCCTG
Seq A exon
GAGCAGGAAAGGACGAAGAGTCCCCGAAGCTGATGCTGAGTTCATGGGGTTGAGCTGACAGCGGCCAACAGGCTGTCATAAACTGTAAGCACACGAGGCTTGTTAGTGCTGTGCTTGCCAGGAGGGAGCAGTCTTTTTTTTCTGTACCTTCTGATCCCTCCCTCCACCCACACCGCACTACAGCAGGTCTGTGGAAAGAGTGGAATCAGCTTAGAGGTTTTTGGGAGGAAGACATTGAAACTCCGTTTTTTCATTTTGTTGTGTTTTTGTTTTTGTTTTTAGATGGAATCTCACTCTGTCCCCCAGGTTGGAGTGCAATGGTGCCATCTTGGCTCACTGCAACCTCCCCGCCCTGGGCTCCAGCCTCGTGCCATGTTTCCCAGGCTGGTCTCGAGCTCCTGGGCTCAAGTGATCTGCCCGCTTGTGCCTCCCAAAATGCTGGGATTACAGACGTGAGCCACCATACCTGGACTGAAACACTTTTAGTCCTGTTGCATGCAAGGATTTAAGTCACCAACGTACGTGGATTCCAGCAAGAAGG
Seq C2 exon
GTTCTAGCATGTATTAACACCGTGTGTCTAAAGTCATCCCTGCTGGTCATCTGGAGGAATCTGAGAAGGGGCAGGTCTTTCTTCTGACTCTCAGAGCAGCACCCTCTGCTGGACAGGGCTGGGCACCTCATCTCAAGCCCAATCTGATCCACCAACAGGGTCTGTTATCTCCGGTCCGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.652116_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCTGCTGCTGATCACG
R:
ATTGGGCTTGAGATGAGGTGC
Band lengths:
357-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development