HsaALTA1053143-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000196417 | ZNF765
Description
zinc finger protein 765 [Source:HGNC Symbol;Acc:HGNC:25092]
Coordinates
chr19:53426490-53426888:+
Coord C1 exon
chr19:53426490-53426584
Coord A exon
chr19:53426865-53426868
Coord C2 exon
chr19:53426869-53426888
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTAGACAGTTCTCTGCTAAGGAA
3' ss Score
0.14
Exon sequences
Seq C1 exon
TCAAGCTGCACTAATCTAGACCAGGGATCCCCACCCCTGGGCTGCAGACCGGTCCCCATGGGTGGCCTGTTAGGAACTGGACCGCACAGCAGGAG
Seq A exon
GAAG
Seq C2 exon
CACGTGGTTGAGAAGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196417-25-41,25-40,25-39,25-38-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTAATCTAGACCAGGGATCCCC
R:
TGATGCTTCTCAACCACGTG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains