HsaEX1045477 @ hg38
Exon Skipping
Gene
ENSG00000196417 | ZNF765
Description
zinc finger protein 765 [Source:HGNC Symbol;Acc:HGNC:25092]
Coordinates
chr19:53426018-53426936:+
Coord C1 exon
chr19:53426018-53426215
Coord A exon
chr19:53426490-53426584
Coord C2 exon
chr19:53426748-53426936
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCTTTTCCAAAGTCA
3' ss Score
7.24
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCGTTATCTCCTGTCCGGGGAAGAGGTGGGCCTCTCTCCGTCGTGGGAGGAGCTCTGAACTTCTCCTTCATCCAGGGATGGGCCCCAGGGACCCACCAGTGGGGCTGGGAGAAGCCCCCCTCAGCAGGAAGACAGAGGTGCCTGGGTGGCCGAGGCCTGGAAGGTCTGCACCATGGTGCACAGAGGCCCCGGAGCTGG
Seq A exon
TCAAGCTGCACTAATCTAGACCAGGGATCCCCACCCCTGGGCTGCAGACCGGTCCCCATGGGTGGCCTGTTAGGAACTGGACCGCACAGCAGGAG
Seq C2 exon
GTGGAACAGTTTAATCCTGAAACCATCCCCCCATCTGTGGAAAAACTGCCTTCCACTAAACCAGTCCCTGGTGCCAAAAACACTGGGAACCGCTAATCTAGACAGTTCTCTGCTAAGGAAGCACGTGGTTGAGAAGCATCAGAATCGTTCCCACGGACCATGCTCCGGAGTCTCAGCAGGCTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196417_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCAGGAAGACAGAGGT
R:
TTCCCAGTGTTTTTGGCACCA
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains