HsaINT0188311 @ hg38
Intron Retention
Gene
ENSG00000160336 | ZNF761
Description
zinc finger protein 761 [Source:HGNC Symbol;Acc:HGNC:23179]
Coordinates
chr19:53445001-53446337:+
Coord C1 exon
chr19:53445001-53445123
Coord A exon
chr19:53445124-53446226
Coord C2 exon
chr19:53446227-53446337
Length
1103 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGA
5' ss Score
1.7
3' ss Seq
TTTCTTTTTTTTGGAGACAGAGT
3' ss Score
1.17
Exon sequences
Seq C1 exon
ATGGAGTTTCGCTCTTGTTGCTCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGAGATTACAG
Seq A exon
GCATGATCCATTGCTCCCAGCCACCCATGTATTCCTGATTGAAAAAATTTGCTTATGTCTTAGTTCTACAGCTGACCCTCTTTCGCTATTTTCAAGGTCAATAGCTGTGTGTTCACACTTCTGCATTTTATAAATGTTACTGTGATTTTCTTCTAAGGAAAAATTAAATGTCAGGAATCAGTGGCATCAGAACCTTGCAAAAGAAGTTTCTTTAGCCCAGGCCTGTGAAAGATGCTTCTGTAATTTTCAAGGATAGGGGTGATAAAGACCAAGCCTTCCCATTAGCCCTTCCAGGCCCCCATGTAAGAATTCAGGCACACCTTCTCACTCATCTCAGACCTTCTCAGGGTAACTTGGTGAAAATTTCCCTGCTCTGAGCCCCAGTGAGCCTCCCTGCAACTTGGAGATGAGGGGCTAGACCAGAAAAGCTCAACCCGAGTGACCCAGTCCCCTGAAATGATCGGCAAAATAGTGCATGTCTTGGCGTGGCCTTTCTTCTGGCAGAGGGGAGTGCCCAGCTGTAATTAGAATTTTAAATGGGATGCAGTACCCCAAAAATAAAATTAAAAAAAATTTTTTAAAAAAACGTGAAAGAATGGAAGAAATAGAGGTGTAGACTCAGACACAGAGACCATCTTCGAGGCCTTTCTCTGTATGAGGACATCACAGCAAAATCTAAAGCAGGTCACGTCAGTCCCTGGCAGGGAACCCTCCACCAGCTTCCCGTGTTCCCCAGAACAAAAGCCCAACTCCTCACTGTGGCTCCACAGCCCTGTGACCAGGGCCCCTGCCAGTGTCCAGCCTCCTCCTGGGAGCTTGCCCTCATCTCATGACTCCCTCTGCCCCAGTCACATTTGCTTTTCTGTTTTCCCAGATATCAAAACCCTTCCTGTCTCAGGTTGCTGTCCCTGCTCTTACCCTATGTCCCTAAATGATCACGGCCCTGTGCCTTTCTTCTTCAGGTCTAGGCTCAGAGATGTCTCCCATGCCCTCCCAACCCCATCTGAAGTTCCCTCTGCCCATCAGTCTCTATCATGTTACTCAGGTTTTATTATCTCTACATCAATCACATCAGAATTTTTTTTTCTTTTTTTTGGAGACAG
Seq C2 exon
AGTATTGCCCGGGCTGTGAGTGCAGTCTCATGATCTTGGGTCACTGCAACCTCTGTTTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCATCCCACGTAGCTGAGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160336:ENST00000432094:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTTCGCTCTTGTTGCT
R:
AATCTCAGCTACGTGGGATGC
Band lengths:
230-1333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains