HsaINT0188311 @ hg19
Intron Retention
Gene
ENSG00000160336 | ZNF761
Description
zinc finger protein 761 [Source:HGNC Symbol;Acc:23179]
Coordinates
chr19:53948254-53949590:+
Coord C1 exon
chr19:53948254-53948472
Coord A exon
chr19:53948473-53949479
Coord C2 exon
chr19:53949480-53949590
Length
1007 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAAT
5' ss Score
3.77
3' ss Seq
TTTCTTTTTTTTGGAGACAGAGT
3' ss Score
1.17
Exon sequences
Seq C1 exon
ATGGAGTTTCGCTCTTGTTGCTCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGAGATTACAGGCATGATCCATTGCTCCCAGCCACCCATGTATTCCTGATTGAAAAAATTTGCTTATGTCTTAGTTCTACAGCTGACCCTCTTTCGCTATTTTCAAG
Seq A exon
GTCAATAGCTGTGTGTTCACACTTCTGCATTTTATAAATGTTACTGTGATTTTCTTCTAAGGAAAAATTAAATGTCAGGAATCAGTGGCATCAGAACCTTGCAAAAGAAGTTTCTTTAGCCCAGGCCTGTGAAAGATGCTTCTGTAATTTTCAAGGATAGGGGTGATAAAGACCAAGCCTTCCCATTAGCCCTTCCAGGCCCCCATGTAAGAATTCAGGCACACCTTCTCACTCATCTCAGACCTTCTCAGGGTAACTTGGTGAAAATTTCCCTGCTCTGAGCCCCAGTGAGCCTCCCTGCAACTTGGAGATGAGGGGCTAGACCAGAAAAGCTCAACCCGAGTGACCCAGTCCCCTGAAATGATCGGCAAAATAGTGCATGTCTTGGCGTGGCCTTTCTTCTGGCAGAGGGGAGTGCCCAGCTGTAATTAGAATTTTAAATGGGATGCAGTACCCCAAAAATAAAATTAAAAAAAATTTTTTAAAAAAACGTGAAAGAATGGAAGAAATAGAGGTGTAGACTCAGACACAGAGACCATCTTCGAGGCCTTTCTCTGTATGAGGACATCACAGCAAAATCTAAAGCAGGTCACGTCAGTCCCTGGCAGGGAACCCTCCACCAGCTTCCCGTGTTCCCCAGAACAAAAGCCCAACTCCTCACTGTGGCTCCACAGCCCTGTGACCAGGGCCCCTGCCAGTGTCCAGCCTCCTCCTGGGAGCTTGCCCTCATCTCATGACTCCCTCTGCCCCAGTCACATTTGCTTTTCTGTTTTCCCAGATATCAAAACCCTTCCTGTCTCAGGTTGCTGTCCCTGCTCTTACCCTATGTCCCTAAATGATCACGGCCCTGTGCCTTTCTTCTTCAGGTCTAGGCTCAGAGATGTCTCCCATGCCCTCCCAACCCCATCTGAAGTTCCCTCTGCCCATCAGTCTCTATCATGTTACTCAGGTTTTATTATCTCTACATCAATCACATCAGAATTTTTTTTTCTTTTTTTTGGAGACAG
Seq C2 exon
AGTATTGCCCGGGCTGTGAGTGCAGTCTCATGATCTTGGGTCACTGCAACCTCTGTTTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCATCCCACGTAGCTGAGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160336-ZNF761:NM_001008401:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTTCGCTCTTGTTGCT
R:
AATCTCAGCTACGTGGGATGC
Band lengths:
326-1333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)