HsaEX7010668 @ hg38
Exon Skipping
Gene
ENSG00000160336 | ZNF761
Description
zinc finger protein 761 [Source:HGNC Symbol;Acc:HGNC:23179]
Coordinates
chr19:53431993-53446337:+
Coord C1 exon
chr19:53431993-53432028
Coord A exon
chr19:53445001-53445123
Coord C2 exon
chr19:53446227-53446337
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTTTTCAGATG
3' ss Score
12.59
5' ss Seq
CAGGCATGA
5' ss Score
1.7
Exon sequences
Seq C1 exon
AGCGGATAGCGTGGAGTGACGGTGCCACCGCGGCGC
Seq A exon
ATGGAGTTTCGCTCTTGTTGCTCAGGCTGGAGTGCAATGGTGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGAGATTACAG
Seq C2 exon
AGTATTGCCCGGGCTGTGAGTGCAGTCTCATGATCTTGGGTCACTGCAACCTCTGTTTCCTGGGTTCAAGTGATTCTTGTGCCTCAGCATCCCACGTAGCTGAGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160336-'0-10,'0-7,1-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATAGCGTGGAGTGAC
R:
CTGTAATCTCAGCTACGTGGGA
Band lengths:
146-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains