HsaEX0070784 @ hg19
Exon Skipping
Gene
ENSG00000167992 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:26487]
Coordinates
chr11:61032428-61035016:-
Coord C1 exon
chr11:61034934-61035016
Coord A exon
chr11:61032594-61032684
Coord C2 exon
chr11:61032428-61032510
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTGTGTCCTGCAGCTG
3' ss Score
11.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGCACCTACACAGGCAGAATCTTCTATAACAACGAGACCTTCCCGTCTGTGCTGGACCCATGTCTGAGCTGCATCTGCCTG
Seq A exon
CTGGGCTCAGTGGCCTGTTCCCCCGTGGACTGCCCCATCACCTGTACCTACCCTTTCCACCCTGACGGGGAGTGCTGCCCCGTGTGCCGAG
Seq C2 exon
ACTGCAACTACGAGGGAAGGAAGGTGGCGAATGGCCAGGTGTTCACCTTGGATGATGAACCCTGCACCCGGTGCACGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167992-'19-21,'19-20,21-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.4=92.9)
A:
PF0009313=VWC=PD(50.0=90.3)
C2:
PF0009313=VWC=PU(46.4=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACAGGCAGAATCTTCT
R:
GGTGCAGGGTTCATCATCCAA
Band lengths:
145-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)