BtaEX0039891 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40482099-40483835:-
Coord C1 exon
chr29:40483753-40483835
Coord A exon
chr29:40482265-40482355
Coord C2 exon
chr29:40482099-40482181
Length
91 bp
Sequences
Splice sites
3' ss Seq
GAGTTTTCTGTGTCCTGCAGCTG
3' ss Score
9.3
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTGCACCTACACAGGCAGAATCTTCTACAACAACCAGACCTTCCCGTCCGTGCTGGACCCGTGCCTGAGCTGCATCTGCCTG
Seq A exon
CTGGGCTCCGTGGCCTGCTCGCCCGTGGACTGCCCCATCACCTGCTCCTACCCTTTCCACCCTGATGGGGAGTGCTGTCCAGTGTGCCAAG
Seq C2 exon
ACTGCAACTACGAGGGGAGGAAGGTGGGGAACGGCCAAGTGTTCACCTTGGACGATGAGCCCTGTACCCAGTGCGTATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.4=92.9)
A:
PF0009313=VWC=PD(50.0=90.3)
C2:
PF0009313=VWC=PU(46.4=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACACAGGCAGAATCTTCT
R:
CTGGCATACGCACTGGGTAC
Band lengths:
160-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development