BtaINT0160808 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40482265-40483835:-
Coord C1 exon
chr29:40483753-40483835
Coord A exon
chr29:40482356-40483752
Coord C2 exon
chr29:40482265-40482355
Length
1397 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
GAGTTTTCTGTGTCCTGCAGCTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GCTGCACCTACACAGGCAGAATCTTCTACAACAACCAGACCTTCCCGTCCGTGCTGGACCCGTGCCTGAGCTGCATCTGCCTG
Seq A exon
GTATGACCACCCTGACCTGGTCCCCGTCTGTAGAAGCTCCCCAGGAACTGCCACCAGCTCTTGAACTCTGGAGGCAAACATCCAGAGACTTCGAAGAGAACGGTTGCTTCCGGGTCTTGGTGAAAGGCGGCTCCCTCCAGCCCTGCCTGGGATGAATCTTCACCCAAGGCCAGAGAAATACTTTTATCCCTGCCCAGCAAACCTCCTCTGCTTCTGGGTGACCAGGGAGGGTCTGGGCGGGGGCCTTAAGGTATAAAGTGTGGCCCAAGGTTCTCCGTGAGAGTGAAGGTGAGGAATGAAAGCCCAGGACTCTGCATGGAATCTTTAATATACTCACGTTTCTCAGCCCGTCCCTGAGCTCAACACAACCTCAGTTAATCCCCAGGGAAGCCTATGAGGTGGGCAGCACTGCCGTCCCCAGCTGCTGGGTGAGAAAACCTGGCACAGGGAGACAGTCATTTGCTCAAGACTCCATAAGTAGTCAAGTGAGGTGCCAGGAATTGATCCTAGCAACCTGAATCTCTTTCAGAAAGCACATGTTTACCTTAAGCCATATCACCTAGGCCATAGCTCAGTCTAAATGACAGGAGTTTCATTTGGTATTTGGAAAATGGAAAAATAAGCCCTTATTGCTTGTCATGCTGGATATGTTTCATGCTGACGAGGCTTCTTTGTTGATGGTGGTCTGCTGAAAAAAGATTGAGACACTTGGGGTGAACATCCCTGGCCTCTGGGTGACCCTGTTCATTCATAGCCGTTTACGTTGGGGAGCTTTGACTTCTGGGTCCTTTCTCCTAAATTAAAAAAATTAATTAATTAATTAATTAATCTTTGGTTGCGCTGGGTCTTTGCTGCTGCCCGTGGGCTTTCTCTAGTTGCGGCGAGCAGGGGCTACTCTTGTTGCAGCGCGTGGACTTCTCAGTGCGGTGGCTTCTCTTGTTGCAGGGCACAGGCTCTAGGCACACAGACTTCAGCAGTTGCAGCACATGGGCTCAGCAGTTGCCGTGCACGAGCTTAGTTGCTCCAAGCCGTGTGGATTCTTCCAGGATTAGGGATCGAGCCCGTGCACCCTGCATTGGCAGGCAGATTCTTATCCGCTGAGCCACCAGGAAAGTCCTTCCTAAGTTCTGAGTGCTCAGCTTCCCTGGGCGGTTCATGACTTGTTCAACAGGTACCTGTTGACAGATGAGCTCTCAGGGCAAGGCCAGGCCCTTGGCCCCGGGGGGCTTGCGTTCTAGCAGGAGGACAGGCTCCTACTTGGTCTGTCCCCTCACCATGGACCCCTAGCCTGACCTTGGTGGCTCCCATGGGCACTCAACAGCTGTGTGGTCTGTCATTCCCGAGTGTCCCTTCAGCCCCCAGAATGAAGGGCCTTGCGAGTTTTCTGTGTCCTGCAG
Seq C2 exon
CTGGGCTCCGTGGCCTGCTCGCCCGTGGACTGCCCCATCACCTGCTCCTACCCTTTCCACCCTGATGGGGAGTGCTGTCCAGTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568:ENSBTAT00000028738:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.4=92.9)
A:
NA
C2:
PF0009313=VWC=PD(50.0=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]