MmuINT0174456 @ mm10
Intron Retention
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10658000-10659511:+
Coord C1 exon
chr19:10658000-10658082
Coord A exon
chr19:10658083-10659420
Coord C2 exon
chr19:10659421-10659511
Length
1338 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
GTGTGGTCTATGTTCTACAGCTG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GCTGCACCTACACAGGTAGAATCTTCTACAACAACGAAACGTTCCCGTCAGTGCTCGACCCCTGTCTGAGCTGCATCTGCCTG
Seq A exon
GTATGCACCACCCAACCTGATCCCAGTCCCCAGCATCAGCTCCTGAAATCCAGACAAGGGTCACCCCTGGTCCTGATGAAAGCCATCTCCCTGCTGCTTGTCTCCCTGCTGCCTGTCTAGCAGGGTTCTTTAGCCAGGATCAGGGAATCATTTGAAAACACTGGCTGATTCAGTATCTGCTTCTGGGTTGCTGAACTCAATGAATCTCACCGTGGCTCATGAGAGAACTAGCCAGCAGAGACCAAGTCCTTTGCTCCTGACTTCATGGCTAGTTAAAGGGCTAGGCACTGAGCCTTAGTATACATGCTCCTGGATCCACACTTGCACCCCAGAGCCAACCCACCTCTTAGTCTAAGAAAAGATGGTTAGTAGTGCACACTAAATTTTCATTGGAAAATAAAGAACACAGTCTCATTGCTTATCATGCTGATATAGTTAATGCTTGGTGGGAGCTGCTGTGGAAGTATGTCTTTGGGGTGTCAGTGAGCCTCAGCCCCAGTTATGTGTGAAACTCAACAAGGTCAACACATGGATTGAGAAATGCAGGGTAAACATCTCTTTGGCCTCTGAGTGACACGTTGCCCACTGGCCCTGTATATTCTCTGTCACGTGCTTTGGGAAATGTTGCTTCTGAGTCCTTTCTCCTCAGTTTCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCATTCTTTTTTAAAAATTTATTGATTTGTTACTTAATTTTTAAAAGACTTATTTATTTTATGTATGTGAATACACCATAGCTGTCTTCGGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGTGTTCTTAACTGCTGAGCCATCTCTCCAGCCCTCCTTTTTTTAAATGATGCTGGAGATGGAACTGAGGGGAGTGTACCACTGAGCTGCACCTCAGCCCTCTCCCTCTCCCTCGGTTTTTGTTTTGTTTTTTTGCTGCTGAGCTTTTCTGGATAATTCTACATTTGTCCAGTGGGTCACTATTGTCAGGTGTCCTTTTGGATAAAGTCAGGCCTTATTCTTGAGAGGTGAGGAAGGACCCTAACTGAGAAAGTGTCACCCCTTTATCCCCATCCTACCATGGATGGCCAATGCTGCTGTCTAGATGGGTCCGCTTTGCTGTGTGCCCCATGCCTTCCCTAGCACCGTACTAGCTGTCCTCAGTGAGGGGCCATGTGTGGTCTATGTTCTACAG
Seq C2 exon
CTGGGCTCAGTGGCCTGTTCACCTGTGGACTGTCCCATCACCTGTACCTACCCCTTCCACCCGGATGGCGAGTGCTGCCCTGTATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789:ENSMUST00000055115:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.4=92.9)
A:
NA
C2:
PF0009313=VWC=PD(50.0=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types