HsaEX0071518 @ hg19
Exon Skipping
Gene
ENSG00000115935 | WIPF1
Description
WAS/WASL interacting protein family, member 1 [Source:HGNC Symbol;Acc:12736]
Coordinates
chr2:175450251-175547644:-
Coord C1 exon
chr2:175547502-175547644
Coord A exon
chr2:175494394-175494596
Coord C2 exon
chr2:175450251-175450339
Length
203 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTCTTTGATTTCCAGGCC
3' ss Score
9.62
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
Exon sequences
Seq C1 exon
GAAGTTCCCGGATGGTCGCAGCCTCCCGGCGCTGAGCGCTTTTCCTGCCCGCCCGGCTCAGCCCTGCGGACCCCGGGAGAAGTTTCCCAGAAAAAATGCCCAGCGCGGCGCGGGGCTGCGGAGTCGTCCGGAGCCGCTGCGCG
Seq A exon
GCCAACAATGGATAGATTTGGTCGTCCTTGAAGCATTTAGAGACCTGTAGAATGAACTTAACTTCTGAAAACTGGGTGCGGGGCCAATAGAGGGGCTGCTCAATACCTCACCAGCCTGCTACGCGGAAGGCTAGATGGAGGGCTGCTAAAGGAAGAGAACTGCTGTTCCACCTCCGCCTCCTCCCTGCAGTGTGGCTTCTTAG
Seq C2 exon
ATTTATCAGCAAGACTGTTGAACGCATAACTGCCCAAGATGCCTGTCCCTCCCCCTCCAGCACCCCCGCCGCCCCCGACGTTTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115935_MULTIEX2-2/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0121314=CAP_N=PU(28.1=94.1),PF062736=eIF-4B=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCCCGGATGGTCGC
R:
CAGTGCAAACGTCGGGGG
Band lengths:
232-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)