HsaEX0072572 @ hg19
Exon Skipping
Gene
ENSG00000169554 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:14881]
Coordinates
chr2:145219750-145228065:-
Coord C1 exon
chr2:145227986-145228065
Coord A exon
chr2:145221733-145221909
Coord C2 exon
chr2:145219750-145219904
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGATTATTTAATATTTGTAGCAA
3' ss Score
4.71
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACTGACTTTAAAACAAAGGCAGAACATTTATTACAAATATCACTGTGTGAAAGGAAATCTACTGAAATATTGTTTAGAAG
Seq A exon
CAAAGACAAACCACCTAAATAGAGAGATTAATTCCACATCAGTGCAACATTAAAAGGGAGAGAGGATGCCAAGAATCCCATTAATTTGGGATATAAGTGTCTGAAATTTCCTCAAAACATTTACGCCAAGGAATACCAACAAGACAATATCAAGCAGCTCTCCCTAAGGATAGAGAG
Seq C2 exon
GCATGTTAAAACTGTATAACCAACAGAACCATTTAAAAGGAAGAAAAACATCACCCAAGTTCCGTGTCTGAATGAAGGCTGTCTTCTCAAATGCTCCTCATTACTCCAGAGCAGTTATATTTGGATTATAATTAAAACGAGGCTTCTTTTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169554-'19-31,'19-30,20-31
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATATCACTGTGTGAAAGGAAA
R:
AGAAGCCTCGTTTTAATTATAATCCA
Band lengths:
195-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)