HsaEX0072572 @ hg38
Exon Skipping
Gene
ENSG00000169554 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:144429769-144517419:-
Coord C1 exon
chr2:144517278-144517419
Coord A exon
chr2:144464166-144464342
Coord C2 exon
chr2:144429769-144430026
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGATTATTTAATATTTGTAGCAA
3' ss Score
4.71
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATCGAGCCTGCGTGCTGCCGAAGCAGGGCGCCGAGTCCATGCGAACTGCCATCTGATCCGCTCTTATCAATGAAGCAGCCGATCATGGCGGATGGCCCCCGGTGCAAGAGGCGCAAACAAGCCAATCCCAGGAGGAAAAACG
Seq A exon
CAAAGACAAACCACCTAAATAGAGAGATTAATTCCACATCAGTGCAACATTAAAAGGGAGAGAGGATGCCAAGAATCCCATTAATTTGGGATATAAGTGTCTGAAATTTCCTCAAAACATTTACGCCAAGGAATACCAACAAGACAATATCAAGCAGCTCTCCCTAAGGATAGAGAG
Seq C2 exon
TGGTGAACTATGACAATGTAGTGGACACAGGTTCTGAAACAGATGAGGAAGACAAGCTTCATATTGCTGAGGATGACGGTATTGCCAACCCTCTGGACCAGGAGACGAGTCCAGCTAGTGTGCCCAACCATGAGTCCTCCCCACACGTGAGCCAAGCTCTGTTGCCAAGAGAGGAAGAGGAAGATGAAATAAGGGAGGGTGGAGTGGAACACCCCTGGCACAACAACGAGATTCTACAAGCCTCTGTAGATGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169554_MULTIEX2-6/9=2-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.908 A=1.000 C2=0.996
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGAACTGCCATCTGAT
R:
TGTGGGGAGGACTCATGGTTG
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development