HsaEX0072669 @ hg19

Exon Skipping

Gene

ENSG00000196670 | ZFP62

Description

zinc finger protein 62 homolog (mouse) [Source:HGNC Symbol;Acc:23241]

Coordinates

chr5:180275138-180288277:-

Coord C1 exon

chr5:180288219-180288277

Coord A exon

chr5:180287528-180287654

Coord C2 exon

chr5:180275138-180278493

Length

127 bp

Sequences

Splice sites

3' ss Seq

ATGATAAGCTCCCGCTGCAGGTG

3' ss Score

4.52

5' ss Seq

TAGGTAGGG

5' ss Score

6.53

Exon sequences

Seq C1 exon

CGTGCGGTCCGCGCTTTTGTCCCGCTGGCGGCCGGGTTCCCGCGGCGCCGCCACAGCCA

Seq A exon

GTGTGAATAGAGACCCCGGAGGTGCGTCCTAGCCCTCATCTGGGGAAGCGCACCTGCATACAGACGGGTGCACCGGGGAGGAGGCGACCTGCCGCGTGTTCCTGCAAGCAGAAAAGGAGTTAACTAG

Seq C2 exon

TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000196670_MULTIEX2-1/2=C1-C2

Average complexity

C1*

Mappability confidence:

100%=100=100%

Protein Impact

5' UTR

No structure available

Features

Disorder rate (Iupred):

C1=1.000 A=1.000 C2=0.191

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=2.8)

Main Inclusion Isoform:

ENSP00000423820f11120A

Main Skipping Isoform:

ENSP00000423820

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

HsaEX0072670

Other assemblies

hg38

Conservation

Mouse

(mm10)

chr11:49203955-49204088

Mouse

(mm9)

chr11:49017457-49017590

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chr7:41418416-41418542

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

GCTTTTGTCCCGCTGGCG

R:

CCCTGATGCTGCTTTTGTCCT

Band lengths:

254-381

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

The Cancer Genome Atlas (TCGA)
Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaEX0072669 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS