HsaEX0072695 @ hg19
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32419926-32444434:-
Coord C1 exon
chr5:32444335-32444434
Coord A exon
chr5:32421736-32421759
Coord C2 exon
chr5:32419926-32420208
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTTCCAACTATTGGTTCTAGTTC
3' ss Score
4.62
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAATATAG
Seq A exon
TTCTGTTCTCTGGAGCAGCATGGA
Seq C2 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCTCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTATGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTAGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACTGACTATGGTTATACTCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAAAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGAAGATGCCAAAATGG
R:
ATAGGCTACACCCGAAGCTGG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)