RnoEX0101807 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62150819-62170684:+
Coord C1 exon
chr2:62150819-62150918
Coord A exon
chr2:62169254-62169277
Coord C2 exon
chr2:62170402-62170684
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTTCCATCTGTTGGTTCTAGTTC
3' ss Score
8.07
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAG
Seq A exon
TTCTGTTCTCTGGAGCAGCATGGA
Seq C2 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080241fB17032
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGAAGATGCCAAAATGG
R:
ATAGGCTACACCCGAAGCTGG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]