RnoEX0101806 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62150251-62170684:+
Coord C1 exon
chr2:62150251-62150529
Coord A exon
chr2:62150819-62150918
Coord C2 exon
chr2:62170402-62170684
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCGTGCCCGCCGCAGTGC
3' ss Score
7.08
5' ss Seq
TAGGTAACG
5' ss Score
7.74
Exon sequences
Seq C1 exon
CCACGAGGGAACTCCACACCCGCACCCCACAAATCTGCCCCTCAGGGGCACCCTGCGCCAGCCCCGGGGTGGGGGTGGGGGTTGGCGTGGGGCGTGAGGACTACATCTCCCAGGATGCATCGCACTAGCGCGCTTGCGCTGTGCGGCCGGCGGCGGCGGTCTGTTCTCCGCTGAGGAGGAGTGGGGCAGAGGAGGGAGGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATG
Seq A exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAGTATAG
Seq C2 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGTTCAGCAGCAGCAG
R:
GTAGCCTCCATAAGCAGCAGC
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]