HsaEX6097594 @ hg38
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32419821-32444761:-
Coord C1 exon
chr5:32444622-32444761
Coord A exon
chr5:32444229-32444328
Coord C2 exon
chr5:32419821-32420103
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCGTGCCCGCCGCAGTGC
3' ss Score
6.59
5' ss Seq
TAGGTAACG
5' ss Score
7.74
Exon sequences
Seq C1 exon
AGTGCGGTCGGAGGCGGCGGTCTGTTCTCCGCTGAGGAGGAGCGGGGCAGAGGAGGGAGGCAGCGGGTGAGAGTTCAGAGTTCAGCAGCAGCAGCCCGAGCCCATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATG
Seq A exon
TGCCCAGCCGGCTGGGGGAAGATGCCAAAATGGCGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAATATAG
Seq C2 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCTCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTATGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTAGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACTGACTATGGTTATACTCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAAAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'0-6,'0-1,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGAGTTCAGCAGCAGCAG
R:
GTAGCCTCCATAAGCAGCAGC
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains