GgaEX1000671 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NLI6]
Coordinates
chrZ:9636610-9652115:-
Coord C1 exon
chrZ:9652079-9652115
Coord A exon
chrZ:9651706-9651790
Coord C2 exon
chrZ:9636610-9636892
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTGCGTTACCGCCGCCACAGTGC
3' ss Score
3.79
5' ss Seq
TAGGTAACC
5' ss Score
6.66
Exon sequences
Seq C1 exon
ATGATTCCCATATGCCCGGTTGTTTCTTTCACCTATG
Seq A exon
TGCCCAGCCGGCTGGGAGAAGATGCCAAAATGGCCACCGGCAACTACTTTGGATTCACCCATAGCGGTGCTGCTGCTCAGTATAG
Seq C2 exon
CCAGCAGCCAGCTTCGGGTGTAGCATATTCCCATCCAACTACAGTGGCTAGCTACACTGTCCACCAGGCACCAGTTGCTGCGCACACAGTTACTGCAGCCTACGCTCCAGCAGCAGCTACAGTTGCAGTAGCCAGGCCTGCTCCAGTGGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTATCCTACAGCGCACACAGCTACAGATTATGGTTATACACAGAGGCAACAAGAAGCTCCGCCACCACCACCTCCTGTCACTACGCAGAATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATATGCCCGGTTGTTTCT
R:
GCCTGGCTACTGCAACTGTAG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]