DreEX0086424 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40538504-40542615:-
Coord C1 exon
chr5:40542560-40542615
Coord A exon
chr5:40542262-40542343
Coord C2 exon
chr5:40538504-40538786
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCCAATCTGTCTTTTTGCAGTGC
3' ss Score
9.13
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTAGAGAATAGGAAACCAATGATTCCCATATGTCCAGTAGTCTCCTTCACCTATG
Seq A exon
TGCCCAGCCGGCTAGGTGAAGATGCCAAAATGGCCACCGGCAACTACTTTGGATTTACCCATGGTGCTGGGGCCCAGTACAG
Seq C2 exon
TCAACAGCCGGCCGCTGGGGTTGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTACATCAAGCACCTGTGGCAGCGCACACAGTGGCAGCAGCCTATGCCCCTACAGCCGCCACGGTTGCTGTTGCAAGGCCTGCGCCAGTCGCTGTAGCGGCTGCGGCTAATGCTGCAGCTTTTGGGGGATATCAACCAGCCCATGCTGCCACGGATTATGGATATGCTCAGAGACAGCCAGAAGTACCCCCACCACCACCTCCAGTCACCTCACAAAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'0-5,'0-0,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.293
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATATGTCCAGTAGTCTCCT
R:
AGGCCTTGCAACAGCAACC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]