HsaEX0072714 @ hg19
Exon Skipping
Gene
ENSG00000067646 | ZFY
Description
zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:12870]
Coordinates
chrY:2803322-2829687:+
Coord C1 exon
chrY:2803322-2803487
Coord A exon
chrY:2821950-2822038
Coord C2 exon
chrY:2829115-2829687
Length
89 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTCCCTGGTTTAGGAG
3' ss Score
7.53
5' ss Seq
TAGGTATTA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GACGGCGGGCCCGTGCCGGGGAGCTGGGCCGCTTTTTGTCAGCTCCGAACTCGGCCCCTCCTCCCTCCCTCCGCCCGCCCTACCAGCCGGAGCCCGGCCCAGTGCTCCAGAGAAAGGCCGTCCTGCAGCACCCGCCGCTGTCGCCGACCGCCCGCACATCCGTCGG
Seq A exon
GAGCTGTGACTAATGAGAATTAAAGGCCATGGATGAAGATGAATTTGAATTGCAGCCACAAGAGCCAAACTCATTTTTTGATGGAATAG
Seq C2 exon
GAGCTGATGCTACACACATGGATGGTGATCAGATTGTTGTGGAAATACAAGAAGCAGTTTTTGTTTCTAATATTGTGGATTCTGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGACTCAGTTGTAATCCAAGATGTTGTTGAAGATGTTGTCATAGAGGAGGATGTTCAGTGCTCAGATATCTTAGAAGAGGCAGATGTATCTGAAAATGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTACCACACTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAACCTCAATGTCTATGCCAGAACATGTTTTAACGAGTGAATCCATGCATGTGTGTGACATTGGACATGTTGAACATATGGTGCATGATAGTGTAGTGGAAGCAGAAATCATTACTGATCCTCTGACGAGTGACATAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCCCCTGAAGCAGTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067646_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.976 C2=0.136
Domain overlap (PFAM):
C1:
NA
A:
PF047048=Zfx_Zfy_act=PU(2.5=23.8)
C2:
PF047048=Zfx_Zfy_act=PU(42.1=74.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTTTGTCAGCTCCGAAC
R:
GATCACCATCCATGTGTGTAGCA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)