HsaEX0072714 @ hg38
Exon Skipping
Gene
ENSG00000067646 | ZFY
Description
zinc finger protein, Y-linked [Source:HGNC Symbol;Acc:HGNC:12870]
Coordinates
chrY:2935281-2961646:+
Coord C1 exon
chrY:2935281-2935446
Coord A exon
chrY:2953909-2953997
Coord C2 exon
chrY:2961074-2961646
Length
89 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTCCCTGGTTTAGGAG
3' ss Score
7.53
5' ss Seq
TAGGTATTA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GACGGCGGGCCCGTGCCGGGGAGCTGGGCCGCTTTTTGTCAGCTCCGAACTCGGCCCCTCCTCCCTCCCTCCGCCCGCCCTACCAGCCGGAGCCCGGCCCAGTGCTCCAGAGAAAGGCCGTCCTGCAGCACCCGCCGCTGTCGCCGACCGCCCGCACATCCGTCGG
Seq A exon
GAGCTGTGACTAATGAGAATTAAAGGCCATGGATGAAGATGAATTTGAATTGCAGCCACAAGAGCCAAACTCATTTTTTGATGGAATAG
Seq C2 exon
GAGCTGATGCTACACACATGGATGGTGATCAGATTGTTGTGGAAATACAAGAAGCAGTTTTTGTTTCTAATATTGTGGATTCTGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGACTCAGTTGTAATCCAAGATGTTGTTGAAGATGTTGTCATAGAGGAGGATGTTCAGTGCTCAGATATCTTAGAAGAGGCAGATGTATCTGAAAATGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTACCACACTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAACCTCAATGTCTATGCCAGAACATGTTTTAACGAGTGAATCCATGCATGTGTGTGACATTGGACATGTTGAACATATGGTGCATGATAGTGTAGTGGAAGCAGAAATCATTACTGATCCTCTGACGAGTGACATAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCCCCTGAAGCAGTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067646-'0-7,'0-5,11-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.905 C2=0.132
Domain overlap (PFAM):
C1:
NA
A:
PF047048=Zfx_Zfy_act=PU(2.5=23.8)
C2:
PF047048=Zfx_Zfy_act=PU(42.1=74.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTTTTGTCAGCTCCGAAC
R:
GATCACCATCCATGTGTGTAGCA
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development