HsaEX0072823 @ hg19

Exon Skipping

Gene

ENSG00000155592 | ZKSCAN2

Description

zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:25677]

Coordinates

chr16:25247326-25258711:-

Coord C1 exon

chr16:25258028-25258711

Coord A exon

chr16:25255106-25255597

Coord C2 exon

chr16:25247326-25252059

Length

492 bp

Sequences

Splice sites

3' ss Seq

ACTTTATCCCCAAATGGCAGGCG

3' ss Score

4.1

5' ss Seq

ATGGTAAGG

5' ss Score

9.33

Exon sequences

Seq C1 exon

GTGGGGTTTAGAAGATGAAAAGATAGCAGGTGTGCATTGGAGCTATGAGGAAACAAAGACTTTCCTGGCAATTCTCAAAGAGTCTCGCTTTTATGAAACACTTCAGGCCTGTCCCCGAAATAGCCAAGTGTATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTTAGAACCCCAGAACAGTGTCGAACCAAGTTCAAAAGTCTCCAGAAAAGCTATCGAAAGGTGAGAAATGGCCACATGCTAGAACCCTGCGCCTTCTTTGAGGACATGGATGCTTTGTTGAACCCTGCAGCCCGTGCTCCGTCCACTGATAAACCAAAGGAGATGATACCTGTCCCCAGACTGAAGAGAATTGCCATCAGTGCTAAGGAACACATCAGCTTGGTGGAGGAGGAGGAAGCTGCAGAAGATTCTGATGATGATGAAATAGGCATCGAATTTATCCGCAAGTCTGAAATCCATGGTGCCCCTGTCTTGTTTCAGAATCTCAGTG

Seq A exon

GCGTGCACTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTCCGTGAGACTCGGTTTTATGAAGCGCTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGGGCTGTAGCTGAACAGCTTCGAGAGTGCGGCTTCCTCCGGACACCAGAACAGTGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGCAAGGTGAAAAATGGCCACGTGCTAGAGTCCTGCGCGTTCTACAAGGAGATGGATGCCCTGATTAACTCTCGGGCATCTGCTCCTTCCCCCAGCACCCCAGAGGAAGTCCCATCACCTTCAAGGCAAGAAAGAGGGGGTATTGAGGTTGAACCCCAGGAACCTACAGGCTGGGAACCTGAAGAGACCTCACAGGAGGCAGTAATAGAAGACTCTTGCAGTGAGAGAATGAGCGAGGAGGAAATTGTGCAAGAGCCAGAGTTCCAGGGACCTCCAGGTCTACTGCAGAGCCCAAATG

Seq C2 exon

ATTTTGAAATCGGAAGTAGCATCAAGGAGGATCCAACACAGATAGTATATAAGGACATGGAACAGCATAGGGCATTAATAGAAAAGTCTAAAAGAGTTGTTTCCCAGAGTACCGACCCCAGCAAATATCGCAAAAGGGAATGCATCTCAGGAAGACAATGGGAAAATCTTCAAGGAATTAGACAGGGAAAGCCGATGTCTCAGCCTAGAGATTTAGGGAAAGCCGTTGTGCATCAGAGGCCTTTTGTGGGGAAGAGACCCTACAGACTTCTCAAATATGGAGAAAGCTTTGGAAGGAGCACTCGTCTGATGTGCCGGATGACCCACCACAAGGAGAATCCTTACAAGTGTGGTGTCTGTGGGAAGTGCTTTGGTAGAAGCAGGAGCCTGATCAGACACCAAAGAATCCACACAGGCGAAAAACCTTTTAAATGTCTTGACTGTGGAAAAAGCTTTAATGACTCCTCAAATTTTGGTGCCCACCAGAGAATCCACACAGGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000155592_MULTIEX1-3/3=2-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.070 A=0.467 C2=0.300

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0),PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)

A:

PF138371=Myb_DNA-bind_4=WD(100=52.1)

C2:

PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)

Main Inclusion Isoform:

ENSP00000331626