HsaEX0072823 @ hg38
Exon Skipping
Gene
ENSG00000155592 | ZKSCAN2
Description
zinc finger with KRAB and SCAN domains 2 [Source:HGNC Symbol;Acc:HGNC:25677]
Coordinates
chr16:25236001-25247390:-
Coord C1 exon
chr16:25246707-25247390
Coord A exon
chr16:25243785-25244276
Coord C2 exon
chr16:25236001-25240738
Length
492 bp
Sequences
Splice sites
3' ss Seq
ACTTTATCCCCAAATGGCAGGCG
3' ss Score
4.1
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTGGGGTTTAGAAGATGAAAAGATAGCAGGTGTGCATTGGAGCTATGAGGAAACAAAGACTTTCCTGGCAATTCTCAAAGAGTCTCGCTTTTATGAAACACTTCAGGCCTGTCCCCGAAATAGCCAAGTGTATGGTGCTGTGGCTGAATGGTTGCGAGAATGTGGCTTCCTTAGAACCCCAGAACAGTGTCGAACCAAGTTCAAAAGTCTCCAGAAAAGCTATCGAAAGGTGAGAAATGGCCACATGCTAGAACCCTGCGCCTTCTTTGAGGACATGGATGCTTTGTTGAACCCTGCAGCCCGTGCTCCGTCCACTGATAAACCAAAGGAGATGATACCTGTCCCCAGACTGAAGAGAATTGCCATCAGTGCTAAGGAACACATCAGCTTGGTGGAGGAGGAGGAAGCTGCAGAAGATTCTGATGATGATGAAATAGGCATCGAATTTATCCGCAAGTCTGAAATCCATGGTGCCCCTGTCTTGTTTCAGAATCTCAGTG
Seq A exon
GCGTGCACTGGGGCTATGAAGAAACCAAGACTTTTCTTGATATCCTCCGTGAGACTCGGTTTTATGAAGCGCTTCAAGCCTGTCATCGGAAGAGCAAATTGTATGGGGCTGTAGCTGAACAGCTTCGAGAGTGCGGCTTCCTCCGGACACCAGAACAGTGCCGAACCAAGTTCAAAAGCCTTCAGAAGAGTTACCGCAAGGTGAAAAATGGCCACGTGCTAGAGTCCTGCGCGTTCTACAAGGAGATGGATGCCCTGATTAACTCTCGGGCATCTGCTCCTTCCCCCAGCACCCCAGAGGAAGTCCCATCACCTTCAAGGCAAGAAAGAGGGGGTATTGAGGTTGAACCCCAGGAACCTACAGGCTGGGAACCTGAAGAGACCTCACAGGAGGCAGTAATAGAAGACTCTTGCAGTGAGAGAATGAGCGAGGAGGAAATTGTGCAAGAGCCAGAGTTCCAGGGACCTCCAGGTCTACTGCAGAGCCCAAATG
Seq C2 exon
ATTTTGAAATCGGAAGTAGCATCAAGGAGGATCCAACACAGATAGTATATAAGGACATGGAACAGCATAGGGCATTAATAGAAAAGTCTAAAAGAGTTGTTTCCCAGAGTACCGACCCCAGCAAATATCGCAAAAGGGAATGCATCTCAGGAAGACAATGGGAAAATCTTCAAGGAATTAGACAGGGAAAGCCGATGTCTCAGCCTAGAGATTTAGGGAAAGCCGTTGTGCATCAGAGGCCTTTTGTGGGGAAGAGACCCTACAGACTTCTCAAATATGGAGAAAGCTTTGGAAGGAGCACTCGTCTGATGTGCCGGATGACCCACCACAAGGAGAATCCTTACAAGTGTGGTGTCTGTGGGAAGTGCTTTGGTAGAAGCAGGAGCCTGATCAGACACCAAAGAATCCACACAGGCGAAAAACCTTTTAAATGTCTTGACTGTGGAAAAAGCTTTAATGACTCCTCAAATTTTGGTGCCCACCAGAGAATCCACACAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155592-'4-9,'4-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.467 C2=0.300
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF138371=Myb_DNA-bind_4=WD(100=37.6),PF138371=Myb_DNA-bind_4=PU(0.1=0.0)
A:
PF138371=Myb_DNA-bind_4=WD(100=52.1)
C2:
PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Main Skipping Isoform:
ENST00000328086fB30545
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGCCCCTGTCTTGTTT
R:
TCAGACGAGTGCTCCTTCCAA
Band lengths:
343-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development