HsaEX0072824 @ hg19
Exon Skipping
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:13853]
Coordinates
chr6:28327302-28329248:+
Coord C1 exon
chr6:28327302-28327765
Coord A exon
chr6:28328281-28328458
Coord C2 exon
chr6:28329101-28329248
Length
178 bp
Sequences
Splice sites
3' ss Seq
TAGCTTTTGTCCTGTTCAAGTTC
3' ss Score
4.14
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
GGATCTTCTGCAGAAATAGCGCTGGAAGCTAGAGTGAGGCCTGAGTACTGCCTTGGCCTAGGATGGCTAGAGAATTAAGTGAAAGCACAGCCCTGGATGCCCAGTCTACAGAAGACCAGATGGAGCTTCTGGTCATAAAGGTGGAGGAAGAAGAAGCCGGTTTTCCCAGTAGCCCAGATCTGGGTTCTGAGGGCTCCCGCGAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGCAGGCCCCCGCGAGGCGCTGAGTCGGCTCCGAGAGCTCTGCCGACAGTGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCGCAG
Seq A exon
TTCATGGACTACGTGGGAAGGAGTTCATGGACCACTGGTTATGAACCTCTGGTAGAAAATGGGCCGACTTTTACCTCCATGTTCTTCCCTGTTTTATGAGACTGTGTCCTCTTTGCATCATCCTGTGTCCCTGTGCACACACCCTCAGAGGACCTGTGTGGCCAGAGCCTTCTAAATG
Seq C2 exon
GTTTCAGGTGTTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACCAGCCCCAGGGTCACAAAGTAGCCAATTTCAGCTAATGAAGGCTCTGCTCAAGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298-'3-4,'3-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.1)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGATGCACAGCAAGGAG
R:
CTACTTTGTGACCCTGGGGCT
Band lengths:
254-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)