HsaEX0072827 @ hg19
Exon Skipping
Gene
ENSG00000189298 | ZKSCAN3
Description
zinc finger with KRAB and SCAN domains 3 [Source:HGNC Symbol;Acc:13853]
Coordinates
chr6:28317691-28331162:+
Coord C1 exon
chr6:28317691-28317741
Coord A exon
chr6:28329101-28329248
Coord C2 exon
chr6:28331080-28331162
Length
148 bp
Sequences
Splice sites
3' ss Seq
TAAGAACAAATGATTTCTAGGTT
3' ss Score
2.84
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGTGGCTTCTGTGCCCCGCCCTGCGGGTGGTTTGCTAGTTTCAAGCACTTT
Seq A exon
GTTTCAGGTGTTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACCAGCCCCAGGGTCACAAAGTAGCCAATTTCAGCTAATGAAGGCTCTGCTCAAGCATGAATCTGTGGGATCCCAGCCTTTACAAGATAGAG
Seq C2 exon
TTCTCCAGGTCCCCGTGCTTGCCCATGGAGGATGCTGCAGAGAAGATAAAGTGGTAGCTTCTAGGCTTACTCCAGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189298_MULTIEX1-3/5=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.040 C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGTGGTTTGCTAGTTT
R:
CTGGGACTCTGGAGTAAGCCT
Band lengths:
114-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)