MmuEX1028797 @ mm10
Exon Skipping
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21394517-21396577:-
Coord C1 exon
chr13:21396100-21396577
Coord A exon
chr13:21394759-21394906
Coord C2 exon
chr13:21394517-21394581
Length
148 bp
Sequences
Splice sites
3' ss Seq
ACTGAATGACTGACTTCCAGGTT
3' ss Score
4.68
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
TAGTCTTTTACAGAAATACAACTCACAGCTACAGTGAAACGGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCTTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAG
Seq A exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGCTCCAAGGCAGTGCTGTTGACATCAGCTCAGGGCTCAGAAAGTAGCCAGATGGAGCCCGTGGAGCCTCTGCTGAAGCAGGAGTCTTTGGGATCCCTGCCCTCAGAAGTCAGAG
Seq C2 exon
TCACTCATGTGGGGCACTGTGGAGAAGATGGAGTGACAGCTACTAGGCTCACATCGGAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-'13-8,'13-5,16-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.576 C2=0.522
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGACAGTGGCTGC
R:
CCGATGTGAGCCTAGTAGCTG
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types