BtaEX6098758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30190489-30193866:-
Coord C1 exon
chr23:30193444-30193866
Coord A exon
chr23:30191773-30191914
Coord C2 exon
chr23:30190489-30190571
Length
142 bp
Sequences
Splice sites
3' ss Seq
AATAAATGAATGACTTTTAGGTC
3' ss Score
5.75
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGGCTAGGGAATCGAAGGAAAGCGCAGCTTTGGACGCCCAGTCTGCAGAGGACCGGACGGGGATCCTGACCGTGAAGGTGGAAAAAGAGGACGCCTCCGTCTTGGCTGCAGAGGCGCGCGCCCCAGGCAGCCCGGCTCCGAGCCCCGAGCACTCCCGCCAGCGCTTCCGAGGCTTCCGCTACCCGGAGGCTGAGGGGCCCCGCGAGGCGCTGAGCCGACTTCGGGAGCTCTGCCGACTGTGGCTGCGGCCTGAGACGCACAGCAAGGAGCAGATGCTGGAGCTGTTGGTGCTGGAGCAGTTCCTGACCATCCTGCCGACGGACCTGCAGAGCTGGATGCGGGAGCAGCATCCAGAGAGCGGGGAGGAGGTGGTGGCGCTCTTGGAGTATCTGGAGAGGCAGCCGGATGGGCCGATGCCGCAG
Seq A exon
GTCCTAGGTGGTGGCCAGGAGCAAGAACTGCTCTGTTGCAAGATGGCAGTGTTGACACCCATTCAGAGGCCACAAAATATCCAGTTCCAGCCAGTGAAGGCTCTGCTCAAGCGTGAATCTCTGGGATCCATTCCAGACAGAG
Seq C2 exon
TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.073 C2=0.179
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=66.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACGCACAGCAAGGAG
R:
GCGAACCTGGTGGCTATCAC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]