MmuEX6057539 @ mm10
Exon Skipping
Gene
ENSMUSG00000054931 | Zkscan4
Description
zinc finger with KRAB and SCAN domains 4 [Source:MGI Symbol;Acc:MGI:3649412]
Coordinates
chr13:21478907-21485507:+
Coord C1 exon
chr13:21478907-21479509
Coord A exon
chr13:21481274-21481430
Coord C2 exon
chr13:21483868-21485507
Length
157 bp
Sequences
Splice sites
3' ss Seq
AGCAAATGAATGATTTTTAGGTT
3' ss Score
4.22
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GATAGATCTAGTCTGAATTCCCATCTTGCGAGAATCTTCTGCAGATACAGCTTGTAGCTAGAGGAGCCTGGAGTTGGCACAGAATGGCTAGAGAACCCGGAACGTCCGCAGCCCTAAACGCTCGGTCTGCAGAAGAGGGCACTGGGCTTCTAGTGGTGAAAGTGGAACAGGAAGAGGCCTCCCCCTTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGAGGCAGCCGGACCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTCTGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGACCTGGGTGCGCGAGCAGCACCCCGACAGCGGGGAGGAGGTGGTGGCGCTGCTGGAGTACTTGGACAGGCAGCTGGATGACACACCTCCACAG
Seq A exon
GTTTCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGGTGACACCATCCCAGGACTCACAAAGTAGCCACTGCCAGGCAATGAAGTCACTCTTCAAGCACGAATCTCAGGAATCTTTGGAGTGTTCGCCCTTACAGGCCAGAG
Seq C2 exon
GGCTGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAGCTGAAGAATACAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGCACTTTTGCTGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCTTGACCAAACACAAGAGAATCCACACAGGAGAGAAGCCCTATGAATGTGAAGACTGTGGGAAGACCTTTATTGGGAGCTCTGCCCTTGTCATTCATCAGAGAGTTCACACTGGGGAGAAGCCATATGAGTGTGAAGAATGTGGCAAAGTCTTCAGTCACAGCTCCAACCTCATCAAGCACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054931-'1-3,'1-0,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.208 C2=0.329
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTGGACAGGCAGCTGGAT
R:
GCTCTTCCCACATTCACAGCA
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types