RnoEX0101936 @ rn6

Exon Skipping

Gene

ENSRNOG00000051823 | Zkscan4

Description

zinc finger with KRAB and SCAN domains 4 [Source:RGD Symbol;Acc:1309004]

Coordinates

chr17:45148646-45154355:-

Coord C1 exon

chr17:45154194-45154355

Coord A exon

chr17:45152280-45152436

Coord C2 exon

chr17:45148646-45149514

Length

157 bp

Sequences

Splice sites

3' ss Seq

AGTAAATGAATGGCTTTTAGGTC

3' ss Score

3.95

5' ss Seq

GAGGTGAGC

5' ss Score

8.7

Exon sequences

Seq C1 exon

AGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG

Seq A exon

GTCCCAACTGGGGAATGGAGTCGAGAACTTCTCTGCTGCAAGGTGGCATTGGTGACATCATCCCAGGATTCACAAAGTAGTCACTCCCAGGCAATGAAGTCTCTCTTCAAGCATGAATCTCAGGAATCTTTGGAGTGTTCACCCTTACAAGCCAGAG

Seq C2 exon

GTCTGGAAATGAAGCCTGAGACCAGGGGCTTGCCTCTAGCTGAGGAATACAAGGAACAAAAGCCTGAGCAGACAGTGTGGTTCCTGGGTGAAGACACTGTCCAGATTTCTACAAGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCATGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTGACCAAACACAAGAGAATCCACACTGGAGAGAAACCCTATGAATGTGAAGACTGTGGGAAGACCTTTATTGGGAGCTCTGCTCTTGTCATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGCAAAGTCTTCAGTCACAGCTCAAACCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCTTATGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGTAGCCTCCTGGAACACCATAAAATT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000051823-'0-1,'0-0,1-1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.130 A=0.321 C2=0.197

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PU(96.4=98.1)

A:

PF0202312=SCAN=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)

Main Inclusion Isoform:

ENSRNOP00000073850