RnoEX6053686 @ rn6
Exon Skipping
Gene
ENSRNOG00000055000 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:RGD Symbol;Acc:1305753]
Coordinates
chr17:45253971-45256084:+
Coord C1 exon
chr17:45253971-45254445
Coord A exon
chr17:45255605-45255752
Coord C2 exon
chr17:45256017-45256084
Length
148 bp
Sequences
Splice sites
3' ss Seq
AATAAATGAATGACTTCTAGGTT
3' ss Score
4.94
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
TATTTTGCAGAAATACAACTCACAACTACATTGAAACAGGAGAACTGCTTGGTTCGGGATGGCTAGAGAATCAAGGGAAAGCACAACCCTGGACTCACACTCTGCAGAGGACCAGATGGAGCTACTGGTCATAAAGGTGGAACAAGAAGAGGTCTCCCCATTGGCAGAGGAGACCAGTTGGCTGGGCAGTCCTGGGCCTGACCGCTCCCGCCAGCGCTTCCGTGCTTTCCGCTACCCAGACGCAGCAGGGCCCCGGCAGGCGCTGAGCCGGCTCCGCGAGCTATGCAGACAGTGGCTGCGGCCAGACATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCCTGGGTGCGCGAGCAGCACCCCGACAGCGGAGAGGAGGTGGTGGCACTGCTGGAGTACTTGGACAGGCAGCTGGATGAGACCCCTCCACAG
Seq A exon
GTTCCAGATGATGACGATGGGCAGGAACTCCTTTGTTCCAAGGCAGTACTGTTGACATCAGCTCAAGGCTCAGAAAGTAGCCAGATGGAGTCCATGGAGCCTTTGCTTAAACAGGAATCTTTGGGATCCCTGCCCTCAGAAGTTAGAG
Seq C2 exon
TAGTCACCCAGGCAGGGCATTGTGGAGAAGATGGAGTGACAGCTACCAGGCTCACATCAGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055000-'8-7,'8-5,9-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.313 A=0.680 C2=0.934
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=67.6)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGCAGACAGTGGCTG
R:
ATGTGAGCCTGGTAGCTGTCA
Band lengths:
255-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]