HsaEX0073416 @ hg19
Exon Skipping
Gene
ENSG00000235109 | ZNF323
Description
zinc finger protein 323 [Source:HGNC Symbol;Acc:14097]
Coordinates
chr6:28297080-28321729:-
Coord C1 exon
chr6:28321639-28321729
Coord A exon
chr6:28304567-28304720
Coord C2 exon
chr6:28297080-28297491
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTTACACGCTCTTCTTCTAGACT
3' ss Score
9.31
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
CCCCGAGTGTTCTTTCAACTACCTGCCACCCATCCAACAACTCCCCTCGGACCTCAGTATGGGCTGGAACCTGACACTTGGCATGACAGTG
Seq A exon
ACTTTGGGATTCCAGAAGACAGAGGTTTGAGTGTAAAACACAAAATAACAAAACCACAACAAAAACAACTCTGTATTCTCGTCCCCACCATTACCATCTCTCCTTTGTGATGTCAAAGAGACCAGAGGAAGTGGACAGACTCGGGGAAGAATAG
Seq C2 exon
CCAGAGTAAGCCTTCCAAATTAACCCCAGGAATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAGACCCTATCTGGGACCAAGAAACCCACCTTCGAGGGAACAACTTTTCTGGCCAAGAAGCCTCCCGACAACTTTTTAGGCAGTTTTGTTACCAAGAGACTCCTGGTCCCCGAGAAGCTCTGAGCCGGCTCCGAGAACTCTGTCATCAGTGGCTAAGGCCAGAAATCCACACCAAAGAGCAAATCTTGGAGCTGCTGGTGCTGGAGCAATTCCTGACTATCCTGCCTGAGGAGCTCCAGGCCTGGGTGCGGGAGCACCATCCGGAGAGTGGGGAGGAGGCTGTGGCTGTAGTTGAAGATCTGGAACAAGAGCTTAGTGAGCCAGGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109_MULTIEX1-4/7=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0202312=SCAN=PU(97.9=74.0),PF100984=DUF2336=PU(53.6=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCTGACACTTGGCATG
R:
GATGACAGAGTTCTCGGAGCC
Band lengths:
254-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)