HsaEX0073413 @ hg19
Exon Skipping
Gene
ENSG00000235109 | ZNF323
Description
zinc finger protein 323 [Source:HGNC Symbol;Acc:14097]
Coordinates
chr6:28295160-28304720:-
Coord C1 exon
chr6:28304567-28304720
Coord A exon
chr6:28297080-28297491
Coord C2 exon
chr6:28295160-28295310
Length
412 bp
Sequences
Splice sites
3' ss Seq
AGTTATCCCTTTACTTAAAGCCA
3' ss Score
3.11
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACTTTGGGATTCCAGAAGACAGAGGTTTGAGTGTAAAACACAAAATAACAAAACCACAACAAAAACAACTCTGTATTCTCGTCCCCACCATTACCATCTCTCCTTTGTGATGTCAAAGAGACCAGAGGAAGTGGACAGACTCGGGGAAGAATAG
Seq A exon
CCAGAGTAAGCCTTCCAAATTAACCCCAGGAATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAGACCCTATCTGGGACCAAGAAACCCACCTTCGAGGGAACAACTTTTCTGGCCAAGAAGCCTCCCGACAACTTTTTAGGCAGTTTTGTTACCAAGAGACTCCTGGTCCCCGAGAAGCTCTGAGCCGGCTCCGAGAACTCTGTCATCAGTGGCTAAGGCCAGAAATCCACACCAAAGAGCAAATCTTGGAGCTGCTGGTGCTGGAGCAATTCCTGACTATCCTGCCTGAGGAGCTCCAGGCCTGGGTGCGGGAGCACCATCCGGAGAGTGGGGAGGAGGCTGTGGCTGTAGTTGAAGATCTGGAACAAGAGCTTAGTGAGCCAGGGAACCAG
Seq C2 exon
GCTCCAGACCATGAACATGGACATTCTGAAGTGCTCTTGGAGGATGTGGAACATCTGAAGGTCAAGCAGGAACCAACAGACATACAGCTTCAGCCTATGGTGACACAGCTCAGATATGAATCTTTTTGCCTCCACCAATTTCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109-'9-22,'9-21,19-22
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.433
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=74.0),PF100984=DUF2336=PU(53.6=40.9)
C2:
PF0202312=SCAN=PD(0.1=0.0),PF100984=DUF2336=PD(44.3=84.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGATTCCAGAAGACAGAGG
R:
TGTTCTTGAAATTGGTGGAGGCA
Band lengths:
302-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)