BtaEX6098754 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037988 | ZNF323
Description
Bos taurus zinc finger protein 323 (ZNF323), mRNA. [Source:RefSeq mRNA;Acc:NM_001046237]
Coordinates
chr23:30115123-30122528:+
Coord C1 exon
chr23:30115123-30115344
Coord A exon
chr23:30121103-30121576
Coord C2 exon
chr23:30122378-30122528
Length
474 bp
Sequences
Splice sites
3' ss Seq
GACATAATTTTTCTCATCAGGTG
3' ss Score
9.2
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGGTTTCCCCTCCTGGGGCTGTATTTCTGGCTCCGAGCTTTGTGATGAAGTAGTCACCAAGTGCATTAACCTCCGGAGCTCCTAGAGAGTACAACAATGCTCCTAGCAGGGAAAGGGCTGCTTGGCGACGGAGCTTGGGATGATGACGTACTTCCGGCCTTTGTAGGTTTTCTGAGTGATGCTGCCTGCGCGGCGGACCTGGAGCTCCCACGATCCCGAAG
Seq A exon
GTGTATCCTCCTAAATAAGATTAAATCAGAGGATCTTAAATCAGTTACACCTCCACCCCAGGCTGGATTGAGCCCTTCTAAATTAATCCCAGGATGGCTTCAGCAGGGGAACAGGATGGACTTAAGATTGTGAAGGTGGAGGAAGACCCTATCTGGGACCAAGAACCCTACCTTCGAGAGAACAACTTTTCTGGCCAGGAAGCCTCCCGCCAACTTTTTAGACACTTTTGTTACCAAGAAACTCCTGGTCCCCGAGAAGCACTGAGCCGGCTTCGGGAACTCTGTCATCAGTGGCTGAGGCCAGACACACATACCAAGGAGCAAATCTTGGAGCTCCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCTGAGGAGCTCCAGGCCTGGGTATGTGAGCACCATCCCGAGAGTGGGGAGGAGGCAGTGGCTGCAGTTGAAGACCTGGAGCGAGAGCTCAGTGAACCAGAGAACCAG
Seq C2 exon
GCCCCAGATTGTGAACATGGACTTGCTGAAATGCTCTCAGGGGATGCAGTGCATTTGAAGGCCAAGGAGGAATCAACAGCTTTCCAGCTTCAGTCCATGGTGATGCAGCTCAAATGTGAATCTTTTGGGGTCCACAAATTTGGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037988-'1-2,'1-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.205 C2=0.255
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=74.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGGCTCCGAGCTTTGTG
R:
TCTCCAAATTTGTGGACCCCA
Band lengths:
344-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]