HsaEX0073413 @ hg38
Exon Skipping
Gene
ENSG00000235109 | ZSCAN31
Description
zinc finger and SCAN domain containing 31 [Source:HGNC Symbol;Acc:HGNC:14097]
Coordinates
chr6:28327383-28336375:-
Coord C1 exon
chr6:28336082-28336375
Coord A exon
chr6:28329303-28329778
Coord C2 exon
chr6:28327383-28327533
Length
476 bp
Sequences
Splice sites
3' ss Seq
ATATAATGCTCTATCATCAGGTG
3' ss Score
7.05
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTTGGGTCTCGATGACCATCTAACTCCTAAATGCTGGGGGCCGCTCCCCATAGAAATGCCTCGCCGGATTTCTCCGCCTCGCACCCAGTGGGACTGGGATTTTTGGCCCCGGGGTTTGCAATAAGGGAGTCACCAAGCAGCAGCCACCTCTGGAATTCCTAGAAAGGAAAGAGTTGCCTGGCTTCAGCCAGTGGGCTCAGAACGGCTGACGCATTTCCGGCCTTTGCGGTTGATCGGTCATTGGGGTGCTGCAGCCCCGCCACCTGTTCCGTAGCTTGCCGGTGCCCCGAAG
Seq A exon
GTGTCTTCTCCTAAGGAAGATTAAATCAGAAAATTTTAAATCACAGTTATCCCTTTACTTAAAGCCAGAGTAAGCCTTCCAAATTAACCCCAGGAATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAGACCCTATCTGGGACCAAGAAACCCACCTTCGAGGGAACAACTTTTCTGGCCAAGAAGCCTCCCGACAACTTTTTAGGCAGTTTTGTTACCAAGAGACTCCTGGTCCCCGAGAAGCTCTGAGCCGGCTCCGAGAACTCTGTCATCAGTGGCTAAGGCCAGAAATCCACACCAAAGAGCAAATCTTGGAGCTGCTGGTGCTGGAGCAATTCCTGACTATCCTGCCTGAGGAGCTCCAGGCCTGGGTGCGGGAGCACCATCCGGAGAGTGGGGAGGAGGCTGTGGCTGTAGTTGAAGATCTGGAACAAGAGCTTAGTGAGCCAGGGAACCAG
Seq C2 exon
GCTCCAGACCATGAACATGGACATTCTGAAGTGCTCTTGGAGGATGTGGAACATCTGAAGGTCAAGCAGGAACCAACAGACATACAGCTTCAGCCTATGGTGACACAGCTCAGATATGAATCTTTTTGCCTCCACCAATTTCAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109-'13-25,'13-23,23-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.260 C2=0.415
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=74.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCTCGCCGGATTTCTC
R:
AGCTGTGTCACCATAGGCTGA
Band lengths:
349-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development