HsaALTA0009790-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000235109 | ZSCAN31
Description
zinc finger and SCAN domain containing 31 [Source:HGNC Symbol;Acc:HGNC:14097]
Coordinates
chr6:28329632-28336375:-
Coord C1 exon
chr6:28336082-28336375
Coord A exon
chr6:28329715-28329778
Coord C2 exon
chr6:28329632-28329714
Length
64 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATATAATGCTCTATCATCAGGTG
3' ss Score
7.05
Exon sequences
Seq C1 exon
GTTTTGGGTCTCGATGACCATCTAACTCCTAAATGCTGGGGGCCGCTCCCCATAGAAATGCCTCGCCGGATTTCTCCGCCTCGCACCCAGTGGGACTGGGATTTTTGGCCCCGGGGTTTGCAATAAGGGAGTCACCAAGCAGCAGCCACCTCTGGAATTCCTAGAAAGGAAAGAGTTGCCTGGCTTCAGCCAGTGGGCTCAGAACGGCTGACGCATTTCCGGCCTTTGCGGTTGATCGGTCATTGGGGTGCTGCAGCCCCGCCACCTGTTCCGTAGCTTGCCGGTGCCCCGAAG
Seq A exon
GTGTCTTCTCCTAAGGAAGATTAAATCAGAAAATTTTAAATCACAGTTATCCCTTTACTTAAAG
Seq C2 exon
CCAGAGTAAGCCTTCCAAATTAACCCCAGGAATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109-13-24,13-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.260
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=74.0)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGCATTTCCGGCCTTT
R:
TCTGTTGAAGCCATTCCTGGG
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development