HsaALTA0009790-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000235109 | ZNF323
Description
zinc finger protein 323 [Source:HGNC Symbol;Acc:14097]
Coordinates
chr6:28297409-28303942:-
Coord C1 exon
chr6:28303859-28303942
Coord A exon
NA
Coord C2 exon
chr6:28297409-28297491
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGTTATCCCTTTACTTAAAGCCA
3' ss Score
3.11
Exon sequences
Seq C1 exon
ACGCATTTCCGGCCTTTGCGGTTGATCGGTCATTGGGGTGCTGCAGCCCCGCCACCTGTTCCGTAGCTTGCCGGTGCCCCGAAG
Seq A exon
NA
Seq C2 exon
CCAGAGTAAGCCTTCCAAATTAACCCCAGGAATGGCTTCAACAGAGGAACAGTACGATCTTAAGATTGTGAAAGTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235109-10-21,10-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.260
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=74.0),PF100984=DUF2336=PU(53.6=40.9)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCGGCCTTTGCGGTT
R:
ACTGTTCCTCTGTTGAAGCCA
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)